setCurrentSpecies | R Documentation |
Change to a different species (organism) for subsequent analysis, thereby changing all annotation maps to this species.
setCurrentSpecies(speciesID = NULL, seqID = NULL)
speciesID |
specify the new species by SpeciesID |
seqID |
-or- specify the new species by any of its SeqIDs |
This is the only method to change annotations between the
various species that the Duffy Lab packages operate on. See MapSets
for full details.
Returns the SpeciesID of the now-current species as a character string. The
main effect of the function is to change all annotation maps, so subsequent calls
to the getCurrent...Map()
family of functions will return annotation
details about this now current species.
setCurrentTarget
, to change the set of organisms under study.
setCurrentSpecies( "Hs_grc")
head( getCurrentGeneMap())
setCurrentSpecies( "Pf3D7")
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