bed2idx: Match bed-like entries to Hi-C bin indices
In robinweide/GENOVA: GENOVA: expore the Hi-C
bed2idx R Documentation
Match bed-like entries to Hi-C bin indices
Description
Match bed-like entries to Hi-C bin indices
Usage
bed2idx(IDX, bed, mode = c("centre", "start", "end"))
Arguments
IDX
The IDX-slot of a contacts object
bed
A 3-column data.frame
mode
A character of length 1 indicating what position of the
bed argument to match with the indices. Possible values:
"center", "start" or "end".
Details
Out of bounds values are matched to nearest bin.
Value
An integer vector of length nrow(bed) and parallel to
bed with indices to the Hi-C matrix.
robinweide/GENOVA documentation built on March 14, 2024, 11:16 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| bed2idx | R Documentation |
Match bed-like entries to Hi-C bin indices
Description
Match bed-like entries to Hi-C bin indices
Usage
bed2idx(IDX, bed, mode = c("centre", "start", "end"))
Arguments
IDX |
The IDX-slot of a |
bed |
A 3-column data.frame |
mode |
A |
Details
Out of bounds values are matched to nearest bin.
Value
An integer vector of length nrow(bed) and parallel to
bed with indices to the Hi-C matrix.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.