engine_default: Engine for repeated matrix lookups
In robinweide/GENOVA: GENOVA: expore the Hi-C
View source: R/methods_matrix_lookup.R
engine_default R Documentation
Engine for repeated matrix lookups
Description
It looks up square parts of equal size in the Hi-C matrix of a single experiment.
Usage
engine_default(MAT, anchors, rel_pos)
Arguments
MAT
The Hi-C matrix slot of a GENOVA experiment object.
anchors
A matrix with two columns containing pre-computed
anchor indices. See the anchors documentation.
rel_pos
An integer vector indicating relative positions in
bins, indicating ranges around anchors to lookup.
Value
A threedimensional array wherein the first dimension is
parallel to the rows in anchors, and the second and third dimensions
are of length m.
See Also
rep_mat_lookup
robinweide/GENOVA documentation built on March 14, 2024, 11:16 p.m.
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View source: R/methods_matrix_lookup.R
| engine_default | R Documentation |
Engine for repeated matrix lookups
Description
It looks up square parts of equal size in the Hi-C matrix of a single experiment.
Usage
engine_default(MAT, anchors, rel_pos)
Arguments
MAT |
The Hi-C matrix slot of a GENOVA experiment object. |
anchors |
A |
rel_pos |
An |
Value
A threedimensional array wherein the first dimension is
parallel to the rows in anchors, and the second and third dimensions
are of length m.
See Also
rep_mat_lookup
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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