draw.centromere.telomere: draw.centromere.telomere

In robinweide/GENOVA: GENOVA: expore the Hi-C

draw.centromere.telomere

Description

Plot the log2-ratio of the relative interaction frequencies. The ratio is calculated over the median of the matrix.

Usage

draw.centromere.telomere(m, cut.off = 2)

Arguments

m	matrix result from centromere-telomere
cut.off	log2-ratio cut.off

Author(s)

Elzo de Wit, [e-mail]

Examples

## Not run: 
# Get a scaled matric of the interchomosomal interactions between 15 and 19
out1519 <- centromere.telomere.analysis(WT_40kb,
  chrom.vec = c("chr15", "chr19")
)

# Plot the results
draw.centromere.telomere(out1519)

## End(Not run)

robinweide/GENOVA documentation built on March 14, 2024, 11:16 p.m.