Files in robinweide/GENOVA
GENOVA: expore the Hi-C

.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
GENOVA.Rproj
LICENSE
LOGO.jpg
LOGO.pdf
Manuscript/setup.txt
NAMESPACE
R/.DS_Store
R/APA.R R/HiC_matrixplot.R R/PESCAn.R R/RCP.R R/RCP.region.R R/Stacked_Elzo.R R/annotateBEDPEwithBED.R R/badBin.find.R R/badBin.plot.R R/chromosomeMatrix.R R/cisTotal.perChrom.R R/cisTotal.scores.R R/construct.experiment.R R/cov2d.R R/differential.TAD.dotplot.R R/differential.TAD.scatterplot.R R/fastDI.R R/fields.interp.surface.R R/frequency.from.matrix.R R/insulation.callTAD.R R/insulation_score.R R/intra.inter.TAD.contacts.R
R/notes/GrangesStuff
R/notes/findCorners
R/notes/fullToHicPro
R/notes/iso_tad_calling
R/notes/transLocMasker.R
R/notes/transLocMasker.R.rtf
R/plot.chrom.comparison.R R/read.bedpe.R R/read.hicpro.matrix.R R/rescale.R R/resize.mat.R R/select.sub.2D.R R/select.sub.R R/select.subset.R R/stackR.R R/stackR.old.R R/stacked.TAD.R R/virtual.4C.R R/visualise.APA.base.R R/visualise.APA.ggplot.R R/visualise.RCP.ggplot.R R/visualise.stackR.ggplot.R R/visualise.stackR2.ggplot.R R/visualise.stacked.TAD.ggplot.R R/visualise.virtual.4C.R README.md fig1.pdf man/APA.Rd man/PESCAn.Rd man/RCP.Rd man/RCP.region.Rd man/annotateBEDPEwithBED.Rd man/badBin.find.Rd man/badBin.plot.Rd man/chrom.comparison.plot.Rd man/chromosome.wide.insulation.Rd man/chromosomeMatrix.Rd man/cisTotal.perChrom.Rd man/cisTotal.scores.Rd man/construct.experiment.Rd man/cov2d.Rd man/differential.TAD.dotplot.Rd man/differential.TAD.scatterplot.Rd man/fastDI.Rd man/fields.interp.surface.Rd man/frequency.from.matrix.Rd man/genome.wide.insulation.Rd man/hic.matrixplot.Rd man/insulation.callTAD.Rd man/insulation.domainogram.Rd man/insulation.plot.dual.Rd man/insulation.plot.single.Rd man/insulation.polygon.Rd man/insulation.score.Rd man/intra.inter.TAD.contacts.Rd man/matrix.insulation.Rd man/read.bedpe.Rd man/read.hicpro.matrix.Rd man/rescale.Rd man/resize.mat.Rd man/select.sub.2D.Rd man/select.sub.Rd man/select.subset.Rd man/stackR.Rd man/stackR.old.Rd man/stacked.TAD.Rd man/virtual.4C.Rd man/visualise.APA.ggplot.Rd man/visualise.RCP.ggplot.Rd man/visualise.base.APA.Rd man/visualise.stackR.ggplot.Rd man/visualise.stackR_V2.ggplot.Rd man/visualise.virtual.4C.Rd
scripts/juicerToGenova.py
versions/.DS_Store
versions/GENOVA_0.9.tar.gz
vignettes/.DS_Store
vignettes/GENOVA.Rmd
vignettes/GENOVA.html
vignettes/GENOVA_files/figure-html/APA-1.pdf
vignettes/GENOVA_files/figure-html/APA-1.png
vignettes/GENOVA_files/figure-html/APA-2.pdf
vignettes/GENOVA_files/figure-html/APA-2.png
vignettes/GENOVA_files/figure-html/PESCAn2-1.pdf
vignettes/GENOVA_files/figure-html/PESCAn2-1.png
vignettes/GENOVA_files/figure-html/PESCAn2-2.pdf
vignettes/GENOVA_files/figure-html/PESCAn2-2.png
vignettes/GENOVA_files/figure-html/RCP-1.pdf
vignettes/GENOVA_files/figure-html/RCP-1.png
vignettes/GENOVA_files/figure-html/RCP-2.pdf
vignettes/GENOVA_files/figure-html/RCP-2.png
vignettes/GENOVA_files/figure-html/chromosomeMatrix-1.pdf
vignettes/GENOVA_files/figure-html/chromosomeMatrix-1.png
vignettes/GENOVA_files/figure-html/chromosomeMatrix-2.pdf
vignettes/GENOVA_files/figure-html/chromosomeMatrix-2.png
vignettes/GENOVA_files/figure-html/cisTotal.perChrom-1.pdf
vignettes/GENOVA_files/figure-html/cisTotal.perChrom-1.png
vignettes/GENOVA_files/figure-html/differentialintra.inter.TAD.contactsDOT-1.pdf
vignettes/GENOVA_files/figure-html/differentialintra.inter.TAD.contactsDOT-1.png
vignettes/GENOVA_files/figure-html/differentialintra.inter.TAD.contactsSCATTER-1.pdf
vignettes/GENOVA_files/figure-html/differentialintra.inter.TAD.contactsSCATTER-1.png
vignettes/GENOVA_files/figure-html/matrix-1.pdf
vignettes/GENOVA_files/figure-html/matrix-1.png
vignettes/GENOVA_files/figure-html/matrix-2.pdf
vignettes/GENOVA_files/figure-html/matrix-2.png
vignettes/GENOVA_files/figure-html/matrix2-1.pdf
vignettes/GENOVA_files/figure-html/matrix2-1.png
vignettes/GENOVA_files/figure-html/stackR-1.pdf
vignettes/GENOVA_files/figure-html/stackR-1.png
robinweide/GENOVA documentation built on Oct. 17, 2017, 2:36 p.m.