select_subset: Get a matrix from a BED-like entry

In robinweide/GENOVA: GENOVA: expore the Hi-C

Get a matrix from a BED-like entry

Description

Extracts a square symmetric matrix around the diagonal from a contacts object.

Usage

select_subset(exp, chrom, start, end)

Arguments

exp	The contacts objects produced by construct.experiment()
chrom	A character of length 1: the chromosome.
start	An integer of length 1 noting the start position in bp.
end	An integer of length 1 noting the end position in bp.

Value

A list with the X and Y coordinates and a matrix Z containing the contacts at these coordinates.

Examples

## Not run: 
# Get the TP53-locus in an experiment mapped to hg19
mat <- select_subset(WT, "chr17", 75e5, 76e5)

# Plot the region
image(mat)

## End(Not run)

robinweide/GENOVA documentation built on March 14, 2024, 11:16 p.m.