API for robinweide/GENOVA
GENOVA: expore the Hi-C

Global functions
APA Man page Source code
ATA Man page Source code
GENOVA_THEME Source code
PESCAn Man page Source code
PESCAn_covert Man page Source code
RCP Man page Source code
ab.polygon Source code
align.insulation Source code
align.insulation.chrom Source code
badBin.find Man page Source code
badBin.plot Man page Source code
centromere.telomere.analysis Man page Source code
chrom.comparison.plot Man page Source code
chromosome.wide.insulation Man page Source code
chromosomeMatrix Man page Source code
cis.compartment.plot Man page Source code
cis.ev Source code
cisTotal.perChrom Man page Source code
cisTotal.scores Man page Source code
compartment.score Man page Source code
compartment.score.chr Source code
compartment.score.plot Source code
construct.experiment Man page Source code
coreRCP Source code
cov2d Man page Source code
delta.insulation.domainogram Source code
differential.TAD.dotplot Man page Source code
differential.TAD.scatterplot Man page Source code
draw.centromere.telomere Man page Source code
draw.chromosome Source code
draw.interarm Source code
draw.loops Source code
draw.tads Source code
draw_exon Source code
eigen.sort Source code
eigen.struct Source code Source code
fastDI Man page Source code
features Source code
fields.interp.surface Man page Source code Source code
find.badBins Source code
frequency.from.matrix Man page Source code
genome.wide.insulation Man page Source code
get.eigen Source code Source code Source code
getPixelMean Source code
hic.matrixplot Man page Source code
insulation.callTAD Man page Source code
insulation.domainogram Man page Source code
insulation.heatmap Man page Source code
insulation.plot.dual Man page Source code
insulation.plot.single Man page Source code
insulation.polygon Man page Source code
insulation.score Man page Source code
inter.arm.data Source code
intra.inter.TAD.contacts Man page Source code
largest.stretch Source code Source code Source code Source code Source code
matrix.insulation Man page Source code
obs.exp.matrix Source code Source code Source code
outlier3Darray Source code Source code
outlierRemovedMean Source code
plot.bw Source code
plot.genes Source code
plot.rectangle Source code
plot.triangle Source code
plotRCP_SpecificBin Source code
quantifyAPA Man page Source code
read.bedpe Man page Source code
read.hicpro.matrix Man page Source code
remove.outliers Source code
rescale Man page Source code Source code
resize.mat Man page Source code Source code
robin_sem Source code
rotate Source code Source code
saddle Man page Source code
saddle.chr Source code
saddle.core Source code
select.arm Source code
select.cis.arm Source code
select.sub Man page Source code
select.sub.2D Man page Source code
select.subset Man page Source code
select.trans.arm Source code
selectData Source code
selectData_saddle Source code Source code
selectTransData Source code Source code
shuffleHiC Man page Source code
switch.EV Source code Source code
switch.chromosomes Source code
trans.compartment.plot Man page Source code
virtual.4C Man page Source code
visualise.APA.base Man page Source code
visualise.APA.ggplot Man page Source code
visualise.ATA.ggplot Man page Source code
visualise.PESCAn.ggplot Man page Source code
visualise.RCP.ggplot Man page Source code
visualise.compartmentStrength Man page Source code
visualise.saddle Man page Source code
visualise.virtual.4C Man page Source code
robinweide/GENOVA documentation built on May 26, 2018, 7:05 a.m.