API for robinweide/GENOVA
GENOVA: expore the Hi-C
| Global functions | |
|---|---|
| APA | Man page Source code |
| PESCAn | Man page Source code |
| RCP | Man page Source code |
| RCP.region | Man page Source code |
| annotateBEDPEwithBED | Man page Source code |
| badBin.find | Man page Source code |
| badBin.plot | Man page Source code |
| chrom.comparison.plot | Man page Source code |
| chromosome.wide.insulation | Man page Source code |
| chromosomeMatrix | Man page Source code |
| cisTotal.perChrom | Man page Source code |
| cisTotal.scores | Man page Source code |
| construct.experiment | Man page Source code |
| cov2d | Man page Source code |
| delta.insulation.domainogram | Source code |
| differential.TAD.dotplot | Man page Source code |
| differential.TAD.scatterplot | Man page Source code |
| draw.loops | Source code |
| draw.tads | Source code |
| draw_exon | Source code |
| fastDI | Man page Source code |
| features | Source code |
| features.bed | Source code |
| features.bw | Source code |
| fields.interp.surface | Man page Source code |
| find.badBins | Source code |
| frequency.from.matrix | Man page Source code |
| genome.wide.insulation | Man page Source code |
| hic.matrixplot | Man page Source code |
| insulation.callTAD | Man page Source code |
| insulation.domainogram | Man page Source code |
| insulation.plot.dual | Man page Source code |
| insulation.plot.single | Man page Source code |
| insulation.polygon | Man page Source code |
| insulation.score | Man page Source code |
| intra.inter.TAD.contacts | Man page Source code |
| matrix.insulation | Man page Source code |
| plot.bw | Source code |
| plot.genes | Source code |
| plot.rectangle | Source code |
| plot.triangle | Source code |
| plotRCP_SpecificBin | Source code |
| read.bedpe | Man page Source code |
| read.hicpro.matrix | Man page Source code |
| rescale | Man page Source code |
| resize.mat | Man page Source code |
| select.sub | Man page Source code |
| select.sub.2D | Man page Source code |
| select.subset | Man page Source code |
| stackR | Man page Man page Source code Source code |
| stackR.old | Man page Source code |
| stacked.TAD | Man page Source code |
| virtual.4C | Man page Source code |
| visualise.APA.ggplot | Man page Source code |
| visualise.RCP.ggplot | Man page Source code |
| visualise.base.APA | Man page Source code |
| visualise.stackR.ggplot | Man page Man page Source code Source code |
| visualise.stackR_V2.ggplot | Man page Source code |
| visualise.virtual.4C | Man page Source code |
