API for robinweide/GENOVA
GENOVA: expore the Hi-C

Global functions
APA Man page Source code
PESCAn Man page Source code
RCP Man page Source code
RCP.region Man page Source code
annotateBEDPEwithBED Man page Source code
badBin.find Man page Source code
badBin.plot Man page Source code
chrom.comparison.plot Man page Source code
chromosome.wide.insulation Man page Source code
chromosomeMatrix Man page Source code
cisTotal.perChrom Man page Source code
cisTotal.scores Man page Source code
construct.experiment Man page Source code
cov2d Man page Source code
delta.insulation.domainogram Source code
differential.TAD.dotplot Man page Source code
differential.TAD.scatterplot Man page Source code
draw.loops Source code
draw.tads Source code
draw_exon Source code
fastDI Man page Source code
features Source code
features.bed Source code
features.bw Source code
fields.interp.surface Man page Source code
find.badBins Source code
frequency.from.matrix Man page Source code
genome.wide.insulation Man page Source code
hic.matrixplot Man page Source code
insulation.callTAD Man page Source code
insulation.domainogram Man page Source code
insulation.plot.dual Man page Source code
insulation.plot.single Man page Source code
insulation.polygon Man page Source code
insulation.score Man page Source code
intra.inter.TAD.contacts Man page Source code
matrix.insulation Man page Source code
plot.bw Source code
plot.genes Source code
plot.rectangle Source code
plot.triangle Source code
plotRCP_SpecificBin Source code
read.bedpe Man page Source code
read.hicpro.matrix Man page Source code
rescale Man page Source code
resize.mat Man page Source code
select.sub Man page Source code
select.sub.2D Man page Source code
select.subset Man page Source code
stackR Man page Man page Source code Source code
stackR.old Man page Source code
stacked.TAD Man page Source code
virtual.4C Man page Source code
visualise.APA.ggplot Man page Source code
visualise.RCP.ggplot Man page Source code
visualise.base.APA Man page Source code
visualise.stackR.ggplot Man page Man page Source code Source code
visualise.stackR_V2.ggplot Man page Source code
visualise.virtual.4C Man page Source code
robinweide/GENOVA documentation built on Oct. 17, 2017, 2:36 p.m.