API for robinweide/GENOVA
GENOVA: expore the Hi-C
| Global functions | |
|---|---|
| APA | Man page Source code |
| ATA | Man page |
| GENOVA_THEME | Source code |
| PESCAn | Man page Source code |
| PESCAn_covert | Man page Source code |
| RCP | Man page Source code |
| ab.polygon | Source code |
| align.insulation | Source code |
| align.insulation.chrom | Source code |
| badBin.find | Man page Source code |
| badBin.plot | Man page Source code |
| bed2idx | Source code |
| centromere.telomere.analysis | Man page Source code |
| chrom.comparison.plot | Man page Source code |
| chromosome.wide.insulation | Man page Source code |
| chromosomeMatrix | Man page Source code |
| cis.compartment.plot | Man page Source code |
| cis.ev | Source code |
| cisTotal.perChrom | Man page Source code |
| cisTotal.scores | Man page Source code |
| compartment.score | Man page Source code |
| compartment.score.chr | Source code |
| compartment.score.plot | Source code |
| construct.experiment | Man page Source code |
| coreRCP | Source code |
| cov2d | Man page Source code |
| delta.insulation.domainogram | Source code |
| differential.TAD.dotplot | Man page Source code |
| differential.TAD.scatterplot | Man page Source code |
| draw.centromere.telomere | Man page Source code |
| draw.chromosome | Source code |
| draw.interarm | Source code |
| draw.loops | Source code |
| draw.tads | Source code |
| draw1loop | Source code |
| draw_exon | Source code |
| eigen.sort | Source code |
| eigen.struct | Source code Source code |
| fastDI | Man page Source code |
| features | Source code |
| fields.interp.surface | Man page Source code Source code |
| fillNAs | Source code |
| find.badBins | Source code |
| frequency.from.matrix | Man page Source code |
| genome.wide.insulation | Man page Source code |
| get.eigen | Source code Source code Source code |
| getDonutMean | Source code |
| getEmptyCols | Source code |
| getPixelMean | Source code |
| getTADstats | Source code |
| gregor | Source code |
| hic.matrixplot | Man page Source code |
| insulation.callTAD | Man page Source code |
| insulation.domainogram | Man page Source code |
| insulation.heatmap | Man page Source code |
| insulation.plot.dual | Man page Source code |
| insulation.plot.single | Man page Source code |
| insulation.polygon | Man page Source code |
| insulation.score | Man page Source code |
| inter.arm.data | Source code |
| intra.inter.TAD.contacts | Man page Source code |
| largest.stretch | Source code Source code Source code Source code Source code |
| matrix.insulation | Man page Source code |
| obs.exp.matrix | Source code Source code Source code |
| outlier3Darray | Source code Source code |
| outlierRemovedMean | Source code |
| plot.bw | Source code |
| plot.genes | Source code |
| plot.rectangle | Source code |
| plot.triangle | Source code |
| plotRCP_SpecificBin | Source code |
| quantifyAPA | Man page Source code |
| quantifyATA | Source code |
| read.bedpe | Man page Source code |
| read.hicpro.matrix | Man page Source code |
| remove.outliers | Source code |
| rescale | Man page Source code Source code |
| resize.mat | Man page Source code Source code |
| robin_sem | Source code |
| rotate | Source code Source code |
| saddle | Man page Source code |
| saddle.chr | Source code |
| saddle.core | Source code |
| select.arm | Source code |
| select.cis.arm | Source code |
| select.sub | Man page Source code |
| select.sub.2D | Man page Source code |
| select.subset | Man page Source code |
| select.trans.arm | Source code |
| selectTransData | Source code |
| shuffleHiC | Man page Source code |
| switch.EV | Source code Source code |
| switch.chromosomes | Source code |
| trans.compartment.plot | Man page Source code |
| try_require | Source code |
| virtual.4C | Man page |
| visualise.APA.base | Man page Source code |
| visualise.APA.ggplot | Man page Source code |
| visualise.ATA.ggplot | Man page Source code |
| visualise.PESCAn.ggplot | Man page |
| visualise.RCP.ggplot | Man page Source code |
| visualise.compartmentStrength | Man page Source code |
| visualise.saddle | Man page Source code |
| visualise.virtual.4C | Man page Source code |
