API for robinweide/GENOVA
GENOVA: expore the Hi-C

Global functions
APA	Man page Source code
ATA	Man page Source code
GENOVA_THEME	Source code
PESCAn	Man page Source code
PESCAn_covert	Man page Source code
RCP	Man page Source code
ab.polygon	Source code
align.insulation	Source code
align.insulation.chrom	Source code
badBin.find	Man page Source code
badBin.plot	Man page Source code
centromere.telomere.analysis	Man page Source code
chrom.comparison.plot	Man page Source code
chromosome.wide.insulation	Man page Source code
chromosomeMatrix	Man page Source code
cis.compartment.plot	Man page Source code
cis.ev	Source code
cisTotal.perChrom	Man page Source code
cisTotal.scores	Man page Source code
compartment.score	Man page Source code
compartment.score.chr	Source code
compartment.score.plot	Source code
construct.experiment	Man page Source code
coreRCP	Source code
cov2d	Man page Source code
delta.insulation.domainogram	Source code
differential.TAD.dotplot	Man page Source code
differential.TAD.scatterplot	Man page Source code
draw.centromere.telomere	Man page Source code
draw.chromosome	Source code
draw.interarm	Source code
draw.loops	Source code
draw.tads	Source code
draw_exon	Source code
eigen.sort	Source code
eigen.struct	Source code Source code
fastDI	Man page Source code
features	Source code
fields.interp.surface	Man page Source code Source code
find.badBins	Source code
frequency.from.matrix	Man page Source code
genome.wide.insulation	Man page Source code
get.eigen	Source code Source code Source code
getPixelMean	Source code
hic.matrixplot	Man page Source code
insulation.callTAD	Man page Source code
insulation.domainogram	Man page Source code
insulation.heatmap	Man page Source code
insulation.plot.dual	Man page Source code
insulation.plot.single	Man page Source code
insulation.polygon	Man page Source code
insulation.score	Man page Source code
inter.arm.data	Source code
intra.inter.TAD.contacts	Man page Source code
largest.stretch	Source code Source code Source code Source code Source code
matrix.insulation	Man page Source code
obs.exp.matrix	Source code Source code Source code
outlier3Darray	Source code Source code
outlierRemovedMean	Source code
plot.bw	Source code
plot.genes	Source code
plot.rectangle	Source code
plot.triangle	Source code
plotRCP_SpecificBin	Source code
quantifyAPA	Man page Source code
read.bedpe	Man page Source code
read.hicpro.matrix	Man page Source code
remove.outliers	Source code
rescale	Man page Source code Source code
resize.mat	Man page Source code Source code
robin_sem	Source code
rotate	Source code Source code
saddle	Man page Source code
saddle.chr	Source code
saddle.core	Source code
select.arm	Source code
select.cis.arm	Source code
select.sub	Man page Source code
select.sub.2D	Man page Source code
select.subset	Man page Source code
select.trans.arm	Source code
selectData	Source code
selectData_saddle	Source code Source code
selectTransData	Source code Source code
shuffleHiC	Man page Source code
switch.EV	Source code Source code
switch.chromosomes	Source code
trans.compartment.plot	Man page Source code
virtual.4C	Man page Source code
visualise.APA.base	Man page Source code
visualise.APA.ggplot	Man page Source code
visualise.ATA.ggplot	Man page Source code
visualise.PESCAn.ggplot	Man page Source code
visualise.RCP.ggplot	Man page Source code
visualise.compartmentStrength	Man page Source code
visualise.saddle	Man page Source code
visualise.virtual.4C	Man page Source code