virtual_4C: Get an average virtual 4C of 2D-regions (e.g. loops).
In robinweide/GENOVA: GENOVA: expore the Hi-C
virtual_4C R Documentation
Get an average virtual 4C of 2D-regions (e.g. loops).
Description
Extract matrices around a defined region a.k.a. the viewpoint
Usage
virtual_4C(explist, viewpoint, xlim = NULL)
Arguments
explist
Either a single GENOVA contacts object or list of
GENOVA contacts.
viewpoint
A viewpoint location. One of the following:
A 3-column, 1-row data.frame in BED-format.
A single character describing a locus in UCSC notation, e.g.
"chr1:30,000,000-40,000,000".
xlim
A vector of two with the flanking basepairs up- and downstream of
the viewpoint, resp.
Value
A virtual4C_discovery object.
robinweide/GENOVA documentation built on March 14, 2024, 11:16 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| virtual_4C | R Documentation |
Get an average virtual 4C of 2D-regions (e.g. loops).
Description
Extract matrices around a defined region a.k.a. the viewpoint
Usage
virtual_4C(explist, viewpoint, xlim = NULL)
Arguments
explist |
Either a single GENOVA |
viewpoint |
A viewpoint location. One of the following:
|
xlim |
A vector of two with the flanking basepairs up- and downstream of the viewpoint, resp. |
Value
A virtual4C_discovery object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.