read.hicpro.matrix: Read hicpro three column matrix format.
In robinweide/GENOVA: GENOVA: expore the Hi-C
read.hicpro.matrix R Documentation
Read hicpro three column matrix format.
Description
This function loads a HiC-pro file as a matrix. It assumes a three-column
layout: bin1, bin2 and score. All scors are normalised to contacts per *scale_bp*
total contacts.
Usage
read.hicpro.matrix(file, scale_bp = 1e+09)
Arguments
file
Full path to file.
scale_bp
Normalising factor. Set to NULL to skip scale_bp.
Value
A data.table with normalised counts.
robinweide/GENOVA documentation built on March 14, 2024, 11:16 p.m.
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| read.hicpro.matrix | R Documentation |
Read hicpro three column matrix format.
Description
This function loads a HiC-pro file as a matrix. It assumes a three-column layout: bin1, bin2 and score. All scors are normalised to contacts per *scale_bp* total contacts.
Usage
read.hicpro.matrix(file, scale_bp = 1e+09)
Arguments
file |
Full path to file. |
scale_bp |
Normalising factor. Set to NULL to skip scale_bp. |
Value
A data.table with normalised counts.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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