ChIP.enhancer: ChIP.enhancer

Description Usage Arguments Value

View source: R/ChIP.enhancer.R

Description

Get a GRanges with enhancer-positions

Usage

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ChIP.enhancer(H3K27ac, activePeak = NULL, ignorePeak = NULL,
  padding = 100, verbose = F)

Arguments

H3K27ac

A BED-df with H3k27ac-peak positions.

activePeak

A BED-df with peak positions of an active enhancer mark (e.g. H3Kme1).

ignorePeak

A BED-df with peak positions of an mark not associated with enhancers (e.g. H3Kme3).

padding

Extend the peaks.

Value

A genomicRanges-object


robinweide/RHWlib documentation built on July 23, 2018, 4:13 a.m.