ChIP.enhancer: ChIP.enhancer
In robinweide/RHWlib: Simple functions to make life... simpler.
Description
Usage
Arguments
Value
Description
Get a GRanges with enhancer-positions
Usage
1
2
ChIP.enhancer(H3K27ac, activePeak = NULL, ignorePeak = NULL,
padding = 100, verbose = F)
Arguments
H3K27ac
A BED-df with H3k27ac-peak positions.
activePeak
A BED-df with peak positions of an active enhancer mark (e.g. H3Kme1).
ignorePeak
A BED-df with peak positions of an mark not associated with enhancers (e.g. H3Kme3).
padding
Extend the peaks.
Value
A genomicRanges-object
robinweide/RHWlib documentation built on May 7, 2019, 8:03 a.m.
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Description Usage Arguments Value
Description
Get a GRanges with enhancer-positions
Usage
1 2 | ChIP.enhancer(H3K27ac, activePeak = NULL, ignorePeak = NULL,
padding = 100, verbose = F)
|
Arguments
H3K27ac |
A BED-df with H3k27ac-peak positions. |
activePeak |
A BED-df with peak positions of an active enhancer mark (e.g. H3Kme1). |
ignorePeak |
A BED-df with peak positions of an mark not associated with enhancers (e.g. H3Kme3). |
padding |
Extend the peaks. |
Value
A genomicRanges-object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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