read.deeptools: Read deeptools computeMatrix files
In robinweide/RHWlib: Simple functions to make life... simpler.
Usage
1
read.deeptools(PATH, FUNC = mean, sortOnMiddle = T, quantiles = c(0, 1))
Arguments
PATH
An abosulte path to a computeMatrix file
FUNC
Which summarising function? Default: mean
sortOnMiddle
Sort the matrices on the centers?
quantiles
A two-number vector. c(0.05,0.95) will dampen the top and bottem 5
A list:
matrixList: A named list of matrices: one per bigwig/bed combination. Names are bigwig<>bed.
metaData: A named list of metadata from you computeMatrix-run.
tidyDF: A dataframe for easy ggplotting.
enrichmentDF: A dataframe with per-loop enrichment of average signal.
BED: A dataframe of the BED-entries.
Read deeptools computeMatrix files
robinweide/RHWlib documentation built on May 7, 2019, 8:03 a.m.
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Usage
1 | read.deeptools(PATH, FUNC = mean, sortOnMiddle = T, quantiles = c(0, 1))
|
Arguments
PATH |
An abosulte path to a computeMatrix file |
FUNC |
Which summarising function? Default: mean |
sortOnMiddle |
Sort the matrices on the centers? |
quantiles |
A two-number vector. c(0.05,0.95) will dampen the top and bottem 5 |
A list:
matrixList: A named list of matrices: one per bigwig/bed combination. Names are bigwig<>bed.
metaData: A named list of metadata from you computeMatrix-run.
tidyDF: A dataframe for easy ggplotting.
enrichmentDF: A dataframe with per-loop enrichment of average signal.
BED: A dataframe of the BED-entries.
Read deeptools computeMatrix files
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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