circPermuteBedpe: circPermuteBedpe
In robinweide/RHWlib: Simple functions to make life... simpler.
Description
Usage
Arguments
Value
Description
Circular permutation of a BEDPE-df
Usage
1
circPermuteBedpe(BEDPE, chrom.sizes, minShuff = 1e+05, maxShuff = NULL)
Arguments
BEDPE
A BEDPE-df with two BED-set in the first 6 columns
chrom.sizes
A data-frame containging two columns: chromosome-name and -length
minShuff
The minimal amount of shuffle in bp (default: 0.1Mb)
maxShuff
The maximal amount of shuffle in bp (default: chromosome-length)
Value
A permuted bedpe-df
robinweide/RHWlib documentation built on May 7, 2019, 8:03 a.m.
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Description Usage Arguments Value
Description
Circular permutation of a BEDPE-df
Usage
1 | circPermuteBedpe(BEDPE, chrom.sizes, minShuff = 1e+05, maxShuff = NULL)
|
Arguments
BEDPE |
A BEDPE-df with two BED-set in the first 6 columns |
chrom.sizes |
A data-frame containging two columns: chromosome-name and -length |
minShuff |
The minimal amount of shuffle in bp (default: 0.1Mb) |
maxShuff |
The maximal amount of shuffle in bp (default: chromosome-length) |
Value
A permuted bedpe-df
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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