circPermuteBedpe: circPermuteBedpe

Description Usage Arguments Value

View source: R/circPermuteBedpe.R

Description

Circular permutation of a BEDPE-df

Usage

1
circPermuteBedpe(BEDPE, chrom.sizes, minShuff = 1e+05, maxShuff = NULL)

Arguments

BEDPE

A BEDPE-df with two BED-set in the first 6 columns

chrom.sizes

A data-frame containging two columns: chromosome-name and -length

minShuff

The minimal amount of shuffle in bp (default: 0.1Mb)

maxShuff

The maximal amount of shuffle in bp (default: chromosome-length)

Value

A permuted bedpe-df


robinweide/RHWlib documentation built on July 23, 2018, 4:13 a.m.