insulation.heatmap: Plot insulation-heatmaps.

Description Usage Arguments Value

View source: R/insulation.heatmap.R

Description

insulations in, plot out

Usage

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insulation.heatmap(insulationList, bed, getOrder = F, focus = 1,
  sortWidth = 10, profileFunct = mean, flank = 5e+05, zlim = c(-1, 1),
  verbose = F, brewerPal = "Greys", brewerDir = -1, profileCols = NULL,
  profileZlim = NULL)

Arguments

insulationList

A named list of results from 'genome.wide.insulation()'.

bed

A bed-df with TAD-calls. Only the first three columns are important.

getOrder

Instead of a plot, get the order of bed

focus

Sort on which sample?

sortWidth

Percentage of columns to sort on (aligned on center)

profileFunct

Funciton to make profile-plots (mean, median, sum, absSum)

flank

Amount of flanking bp.

zlim

zlims c(min,max) for heatmap

verbose

Chatty?

brewerPal

Colorbrewer-palette to use

profileCols

Vector of colors for profile-plots

profileZlim

zlims c(min,max) for profile

brewerDit

-1 flips the palette.

Value

A plot


robinweide/RHWlib documentation built on July 23, 2018, 4:13 a.m.