Description Usage Arguments Value
insulations in, plot out
1 2 3 4 | insulation.heatmap(insulationList, bed, getOrder = F, focus = 1,
sortWidth = 10, profileFunct = mean, flank = 5e+05, zlim = c(-1, 1),
verbose = F, brewerPal = "Greys", brewerDir = -1, profileCols = NULL,
profileZlim = NULL)
|
insulationList |
A named list of results from 'genome.wide.insulation()'. |
bed |
A bed-df with TAD-calls. Only the first three columns are important. |
getOrder |
Instead of a plot, get the order of bed |
focus |
Sort on which sample? |
sortWidth |
Percentage of columns to sort on (aligned on center) |
profileFunct |
Funciton to make profile-plots (mean, median, sum, absSum) |
flank |
Amount of flanking bp. |
zlim |
zlims c(min,max) for heatmap |
verbose |
Chatty? |
brewerPal |
Colorbrewer-palette to use |
profileCols |
Vector of colors for profile-plots |
profileZlim |
zlims c(min,max) for profile |
brewerDit |
-1 flips the palette. |
A plot
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