intersectBedgraph: intersectBedgraph
In robinweide/RHWlib: Simple functions to make life... simpler.
Description
Usage
Arguments
Value
Description
GRbed vs GRbg
Usage
1
intersectBedgraph(bed, bg, padding = 0, alignment = "mean", vectorOut = F)
Arguments
bed
A Granges with regions to subset with.
bg
A Granges with scores (AKA bedgraph/bigwig).
padding
Increase search-space around bed.
alignment
When multiple hits, What to do? [upstream, downstream, middle, mean, median]
vectorOut
Instead of a Grangesm output just a vector of scores per TAD
Value
A genomicRanges-object
robinweide/RHWlib documentation built on May 7, 2019, 8:03 a.m.
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Description Usage Arguments Value
Description
GRbed vs GRbg
Usage
1 | intersectBedgraph(bed, bg, padding = 0, alignment = "mean", vectorOut = F)
|
Arguments
bed |
A Granges with regions to subset with. |
bg |
A Granges with scores (AKA bedgraph/bigwig). |
padding |
Increase search-space around bed. |
alignment |
When multiple hits, What to do? [upstream, downstream, middle, mean, median] |
vectorOut |
Instead of a Grangesm output just a vector of scores per TAD |
Value
A genomicRanges-object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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