Files in roblanf/sangeranalyseR
sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/AllGenerics.R
R/ClassChromatogramParam.R
R/ClassObjectResults.R
R/ClassQualityReport.R
R/ClassSangerAlignment.R
R/ClassSangerContig.R
R/ClassSangerRead.R
R/Constructors.R
R/LoadMessage.R
R/MethodSangerAlignment.R
R/MethodSangerContig.R
R/MethodSangerRead.R
R/MethodShared.R
R/MethodsQualityReport.R
R/ShinySangerAlignmentServer.R
R/ShinySangerAlignmentUI.R
R/ShinySangerContigServer.R
R/ShinySangerContigUI.R
R/ShinyServerModule.R
R/UtilitiesFunc.R
R/UtilitiesFuncInputChecker.R
R/data.R
R/sangeranalyseR_package.R
R/sangeranalyseR_show_method.R
data/qualityReportData.RData
data/sangerAlignmentData.RData
data/sangerContigData.RData
data/sangerReadFData.RData
docs/Makefile
docs/README.md
docs/build/doctrees/content/advance_user_SangerAlignment_ab1.doctree
docs/build/doctrees/content/advance_user_SangerAlignment_fasta.doctree
docs/build/doctrees/content/advance_user_SangerContig_ab1.doctree
docs/build/doctrees/content/advance_user_SangerContig_fasta.doctree
docs/build/doctrees/content/advance_user_SangerRead_ab1.doctree
docs/build/doctrees/content/advance_user_SangerRead_fasta.doctree
docs/build/doctrees/content/beginner.doctree
docs/build/doctrees/content/conclusion.doctree
docs/build/doctrees/content/contact.doctree
docs/build/doctrees/content/frequent_questions.doctree
docs/build/doctrees/content/function_manual.doctree
docs/build/doctrees/content/help.doctree
docs/build/doctrees/content/how_to_page.doctree
docs/build/doctrees/content/installation.doctree
docs/build/doctrees/content/license.doctree
docs/build/doctrees/content/quickstart.doctree
docs/build/doctrees/environment.pickle
docs/build/doctrees/index.doctree
docs/build/html/.buildinfo
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inst/extdata/fasta/SangerRead/Achl_ACHLO006-09_1_F.fast
inst/extdata/fasta/SangerRead/Achl_ACHLO006-09_2_R.fa
inst/rmd/SangerAlignment_Report.Rmd
inst/rmd/SangerContig_Report.Rmd
inst/rmd/SangerRead_Report_ab1.Rmd
inst/rmd/SangerRead_Report_fasta.Rmd
man/ChromatogramParam-class.Rd
man/MakeBaseCalls-methods.Rd
man/ObjectResults-class.Rd
man/QualityReport-class-qualityBasePlot.Rd
man/QualityReport-class-updateQualityParam.Rd
man/QualityReport-class.Rd
man/SangerAlignment-class-generateReportSA.Rd
man/SangerAlignment-class-launchAppSA.Rd
man/SangerAlignment-class-updateQualityParam.Rd
man/SangerAlignment-class-writeFastaSA.Rd
man/SangerAlignment-class.Rd
man/SangerAlignment.Rd
man/SangerContig-class-generateReportSC.Rd
man/SangerContig-class-launchAppSC.Rd
man/SangerContig-class-readTable.Rd
man/SangerContig-class-updateQualityParam.Rd
man/SangerContig-class-writeFastaSC.Rd
man/SangerContig-class.Rd
man/SangerContig.Rd
man/SangerRead-class-MakeBaseCalls.Rd
man/SangerRead-class-generateReportSR.Rd
man/SangerRead-class-qualityBasePlot.Rd
man/SangerRead-class-readTable.Rd
man/SangerRead-class-updateQualityParam.Rd
man/SangerRead-class-writeFastaSR.Rd
man/SangerRead-class.Rd
man/SangerRead.Rd
man/generateReport.Rd
man/generateReportSA-methods.Rd
man/generateReportSC-methods.Rd
man/generateReportSR-methods.Rd
man/launchApp.Rd
man/launchAppSA-methods.Rd
man/launchAppSC-methods.Rd
man/qualityBasePlot-methods.Rd
man/qualityReportData.Rd
man/readTable-methods.Rd
man/sangerAlignmentData.Rd
man/sangerContigData.Rd
man/sangerReadFData.Rd
man/sangeranalyseR.Rd
man/updateQualityParam-methods.Rd
man/writeFasta.Rd
man/writeFastaSA-methods.Rd
man/writeFastaSC-methods.Rd
man/writeFastaSR-methods.Rd
readme.md
sangerAlignmentData.RData
tests/testthat.R
tests/testthat/helper-SangerAlignment-ABIF.R
tests/testthat/helper-SangerAlignment-FASTA.R
tests/testthat/helper-SangerContig-ABIF.R
tests/testthat/helper-SangerContig-FASTA.R
tests/testthat/helper-SangerRead-ABIF-forward.R
tests/testthat/helper-SangerRead-ABIF-reverse.R
tests/testthat/helper-SangerRead-FASTA-forward.R
tests/testthat/helper-SangerRead-FASTA-reverse.R
tests/testthat/helper-SangerRead-prechecking.R
tests/testthat/test-Constructors.R
tests/testthat/test-QualityReport.R
tests/testthat/test-SangerAlignment-ABIF.R
tests/testthat/test-SangerAlignment-Compare.R
tests/testthat/test-SangerAlignment-FASTA.R
tests/testthat/test-SangerContig-ABIF.R
tests/testthat/test-SangerContig-Compare.R
tests/testthat/test-SangerContig-FASTA.R
tests/testthat/test-SangerRead-ABIF.R
tests/testthat/test-SangerRead-Compare.R
tests/testthat/test-SangerRead-FASTA.R
tests/testthat/test-interal-functions.R
vignettes/sangeranalyseR
vignettes/sangeranalyseR.Rmd
