Description Usage Arguments Details Value
Internal operators, used to modify mpcross objects.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 | ## S4 method for signature 'rawSymmetricMatrix,index,index,logical'
x[i, j, ..., drop = TRUE]
## S4 method for signature 'rawSymmetricMatrix,index,index,missing'
x[i, j, ..., drop = TRUE]
## S4 method for signature 'rawSymmetricMatrix,missing,missing,missing'
x[i, j, ..., drop = TRUE]
## S4 method for signature 'rawSymmetricMatrix,matrix,missing,missing'
x[i, j, ..., drop = TRUE]
## S4 method for signature 'geneticData,assignFounderPattern'
e1 + e2
## S4 method for signature 'mpcross,assignFounderPattern'
e1 + e2
## S4 method for signature 'mpcrossMapped,assignFounderPattern'
e1 + e2
## S4 method for signature 'geneticData,assignFounderPatternPrototype'
e1 + e2
## S4 method for signature 'mpcross,assignFounderPatternPrototype'
e1 + e2
## S4 method for signature 'mpcrossMapped,assignFounderPatternPrototype'
e1 + e2
## S4 method for signature 'geneticData,biparentalDominant'
e1 + e2
## S4 method for signature 'mpcross,biparentalDominant'
e1 + e2
## S4 method for signature 'geneticData,fixedNumberOfFounderAlleles'
e1 + e2
## S4 method for signature 'mpcross,fixedNumberOfFounderAlleles'
e1 + e2
## S4 method for signature 'geneticData,multiparentSNP'
e1 + e2
## S4 method for signature 'mpcross,multiparentSNP'
e1 + e2
## S4 method for signature 'geneticData,multiparentSNPPrototype'
e1 + e2
## S4 method for signature 'mpcross,multiparentSNPPrototype'
e1 + e2
## S4 method for signature 'mpcross,removeHets'
e1 + e2
## S4 method for signature 'geneticData,normalPhenotype'
e1 + e2
## S4 method for signature 'mpcross,normalPhenotype'
e1 + e2
|
x |
object from which to extract element(s) |
i, j |
indices specifying elements to extract or replace |
... |
Currently unused |
drop |
If TRUE the result is coerced to the lowest possible dimension |
e1 |
Object one |
e2 |
Object two |
These operators are used to combine objects in order to apply a function. For example, e1 + biparentalDominant()
returns the biparental design e1
, with all markers converted to dominant markers. Consult the documentation on the individual functions, rather than this list of operators.
Various. Not for external use.
Modified version of the input object. The class of the output depends on the class of the input.
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