create_door_database: Compose a Response Matrix of All Odor Receptors

In ropensci/DoOR.functions: Integrating Heterogeneous Odorant Response Data into a Common Response Model: A DoOR to the Complete Olfactome

Compose a Response Matrix of All Odor Receptors

Description

computes the complete response model for all receptors in the database (calls model_response for all receptors). Overwrites response_matrix, door_response_matrix_non_normalized and door_excluded_data.

Usage

create_door_database(tag = door_default_values("tag"),
  select.MDValue = door_default_values("select.MDValue"),
  overlapValues = door_default_values("overlapValues"), ...)

Arguments

tag	character string, format for rownames, possibilities: "InChIKey", CAS", "CID", "Name"
select.MDValue	a numeric, threshold on the MD, this is used to reject studies that do not align sufficiently well to the response model
overlapValues	numeric, a criterion using to refuse a data set that has not enough overlap value.
...	pass more parameters to model_response

Author(s)

Shouwen Ma <[e-mail]>

Daniel Münch <[e-mail]>

See Also

model_response

Examples

## Not run: 
# load DoOR data
library(DoOR.data)
load_door_data()

# create a new consensus matrix
create_door_database()

## End(Not run)

ropensci/DoOR.functions documentation built on Feb. 22, 2024, 9:44 a.m.