export_door_data: export data

In ropensci/DoOR.functions: Integrating Heterogeneous Odorant Response Data into a Common Response Model: A DoOR to the Complete Olfactome

export data

Description

export odor response data and supported data

Usage

export_door_data(file.format, directory,
  odorantReceptors = door_default_values("ORs"),
  response_matrix = door_default_values("door_response_matrix"),
  responseRange = door_default_values("door_response_range"),
  unglobalNorm_RM = door_default_values("door_response_matrix_non_normalized"),
  weightGlobNorm = door_default_values("door_global_normalization_weights"),
  all.data = TRUE)

Arguments

file.format	character string, the format of given file, either ".txt" or ".csv"
directory	character string, naming a directory for writing. If missing, the exported data are saved in current working directory.
odorantReceptors	data frame, receptor names and expressions
response_matrix	data matrix, an global unnormalized responses matrix
responseRange	data frame, response ranges for each study
unglobalNorm_RM	data matrix, an unnormalized responses matrix
weightGlobNorm	data frame, weight matrix for global normalizazion
all.data	logical, if TRUE, export odorant response data and supported data "door_response_matrix", "door_response_range", "door_response_matrix_non_normalized", "door_response_matrix", "door_global_normalization_weights" and "ORs".

Details

Please load ORs from data package DoOR.data by typing (data(ORs)) before use.

Author(s)

Shouwen Ma <[e-mail]>

Examples

## Not run: 
# load data
library(DoOR.data)
library(DoOR.functions)
load_door_data()

# export odorant response data only
export_door_data(".txt", all.data = FALSE) 	

## End(Not run)

ropensci/DoOR.functions documentation built on Feb. 22, 2024, 9:44 a.m.