dplot_response_profile: dplot_response_profile

In ropensci/DoOR.functions: Integrating Heterogeneous Odorant Response Data into a Common Response Model: A DoOR to the Complete Olfactome

dplot_response_profile

Description

create a barplot of a DoOR response profile

Usage

dplot_response_profile(receptor,
  response_matrix = door_default_values("door_response_matrix"),
  odor_data = door_default_values("odor"), tag = door_default_values("tag"),
  colored = TRUE, colors = door_default_values("colors"), limits,
  zero = door_default_values("zero"),
  scalebar = door_default_values("scalebar"), base_size = 12)

Arguments

receptor	character, receptor name, any of colnames(door_response_matrix)
response_matrix	a DoOR door_response_matrix
odor_data	data frame, contains the odorant information.
tag	character, chemical identifier for annotation
colored	logical, color code the bars according to the response value?
colors	character vector, a vector of 5 colors (2 for values < 0, 1 value for 0 and 3 values > 0)
limits	numeric of length 2, the limits for the colorscale and the x axis, global range of data will be used if empty
zero	character, the odorant response that is set to 0, defaults to "SFR"
scalebar	logical, add or suppress scalebars
base_size	numeric, the base font size for the ggplot2 plot

Value

ggplot2 plot

Author(s)

Daniel Münch <[e-mail]>

Examples

# load data
library(DoOR.data)
data(door_response_matrix)

# plot with default parameters
dplot_response_profile("Or22a", door_response_matrix)

# plot wit odorant names
dplot_response_profile("Or22a", door_response_matrix, tag = "Name")

ropensci/DoOR.functions documentation built on Feb. 22, 2024, 9:44 a.m.