dplot_across_ru: dplot_across_ru

In ropensci/DoOR.functions: Integrating Heterogeneous Odorant Response Data into a Common Response Model: A DoOR to the Complete Olfactome

dplot_across_ru

Description

barplot of DoOR responses of a set of odorant across all responding units in DoOR

Usage

dplot_across_ru(odorant,
  response_matrix = door_default_values("door_response_matrix"),
  odor_data = door_default_values("odor"),
  zero = door_default_values("zero"), tag = "Name", limits,
  base_size = 12)

Arguments

odorant	character vecto, one or several InChIKeys
response_matrix	DoOR response matrix, a DoOR response matrix as data source
odor_data	data frame, contains the odorant information.
zero	character, an InChIKey of the odorant that should be set to 0
tag	character, the chemical identifier to plot as odorant name (one of colnames(odor))
limits	numeric of length 2, if provided the ylim will range accordingly
base_size	numeric, the base font size for the ggplot2 plot

Value

a ggplot object

Author(s)

Daniel Münch <[e-mail]>

Examples

# load data
library(DoOR.data)
library(DoOR.functions)
data(odor)

# plot activation pattern of one or several odorants
dplot_across_ru(trans_id("123-92-2"), tag = "CAS")
dplot_across_ru(odor$InChIKey[4:10])

ropensci/DoOR.functions documentation built on Feb. 22, 2024, 9:44 a.m.