create_laplace_distr: Create a Laplace distribution

In ropensci/beautier: 'BEAUti' from R

Create a Laplace distribution

Description

Create a Laplace distribution

Usage

create_laplace_distr(
  id = NA,
  mu = 0,
  scale = 1,
  value = NA,
  lower = NA,
  upper = NA
)

Arguments

id	the distribution's ID
mu	the mu parameter, a numeric value. For advanced usage, use the structure as returned by create_mu_param
scale	the scale parameter, a numeric value. For advanced usage, use the structure as returned by create_scale_param
value	the initial value for the MCMC
lower	the lower bound, the lowest possible value
upper	an upper limit of the uniform distribution. If the upper limits needs to be infinity, set upper to Inf.

Value

a Laplace distribution

Author(s)

Richèl J.C. Bilderbeek

See Also

the function create_distr shows an overview of all supported distributions

Examples

if (is_on_ci()) {

  laplace_distr <- create_laplace_distr()

  beast2_input_file <- get_beautier_tempfilename()
  create_beast2_input_file(
    input_filename = get_fasta_filename(),
    beast2_input_file,
    tree_prior = create_yule_tree_prior(
      birth_rate_distr = laplace_distr
    )
  )
  file.remove(beast2_input_file)

  remove_beautier_folder()
}

ropensci/beautier documentation built on April 2, 2024, 5:01 a.m.