mrca_prior_to_xml_prior_distr: Creates the distribution section in the prior section of the...

In ropensci/beautier: 'BEAUti' from R

Creates the distribution section in the prior section of the distribution section of a BEAST2 XML parameter file.

Description

These lines start with '<distribution id='

Usage

mrca_prior_to_xml_prior_distr(inference_model)

Arguments

inference_model

a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.

Value

lines of XML text

Author(s)

Richèl J.C. Bilderbeek

Examples

check_empty_beautier_folder()

 # <distribution id="posterior" spec="util.CompoundDistribution">
 #     <distribution id="prior" spec="util.CompoundDistribution">
 #       HERE, where the ID of the distribution is 'prior'
 #     </distribution>
 #     <distribution id="likelihood" ...>
 #     </distribution>
 # </distribution>

check_empty_beautier_folder()

ropensci/beautier documentation built on July 9, 2024, 6:14 a.m.