mrca_prior_to_xml_taxonset: Creates the 'taxonset' section in the prior section of the...

In ropensci/beautier: 'BEAUti' from R

Creates the taxonset section in the prior section of the distribution section of a BEAST2 XML parameter file.

Description

Creates the taxonset section in the prior section of the distribution section of a BEAST2 XML parameter file.

Usage

mrca_prior_to_xml_taxonset(mrca_prior, taxa_names_with_ids = NULL)

Arguments

mrca_prior	a Most Recent Common Ancestor prior, as returned by create_mrca_prior
taxa_names_with_ids	taxa names that already have received an ID. Causes the XML to idref these

Details

<taxonset id="all" spec="TaxonSet"> <taxon id="626029_aco" spec="Taxon"/> <taxon id="630116_aco" spec="Taxon"/> <taxon id="630210_aco" spec="Taxon"/> <taxon id="B25702_aco" spec="Taxon"/> <taxon id="61430_aco" spec="Taxon"/> </taxonset>

Value

lines of XML text

Author(s)

Richèl J.C. Bilderbeek

ropensci/beautier documentation built on April 2, 2024, 5:01 a.m.