getb0.rnaseq: compute b0, projection matrix, given counts

In rosedu1/deconvSeq: Cell Type Deconvolution for RNA Sequencing and Bisulfite Sequencing

Description

compute b0, projection matrix, given counts

Usage

getb0.rnaseq(dge, design, ncpm.min = 1, nsamp.min = 4, sigg = NULL)

Arguments

dge	DGE object
design	output of model.matrix
ncpm.min	filtering threshold for cpm
nsamp.min	minimum number of samples that must have cpm exceeding ncpm.min for a gene to be retained
sigg	vector of predetermined significant genes

Value

b0 projection matrix

p0 pvalues matrix

dge DGE object

converged convergence status. 1=converged.

pfstat F-stat p-values for each gene

Examples

## Not run: 
 data("data_celltypes_rnaseq") 
 dge.celltypes = getdge(cnts.celltypes, design.rnaseq, ncpm.min=1, nsamp.min=4)
 b0 = getb0.rnaseq(dge.celltypes, design.rnaseq, ncpm.min=1, nsamp.min=4, sigg=NULL)
 
## End(Not run)

rosedu1/deconvSeq documentation built on Aug. 19, 2020, 7:10 p.m.