CopyNumberMixtureSummary-class: A plottable summary of a mixture model and inferred copy...

In rscharpf/MixModelViz: Plot mixture models with applications to copy number or batch effects

Description

An object summarizing the observed mixture model and theoretical models as plottable data.frames.

Slots

observed

data.frame of observed values. Must have the following columns: "batch" (bactor), "component" (factor), "copynumber" (factor), "x.val" (numeric). Otherwise identical to 'MixtureSummary' .

theoretical

data.frame of predicted densities. Must have the following columns: "batch" (factor), "component" (factor), "copynumber" (factor), "x" (numeric), "y" (numeric). Otherwise identical to 'MixtureSummary' .

nBins

integer value for reccomended number of bins when plotting over the exact range of '.Data@observed$x.val' . Identical to 'MixtureSummary' .

rscharpf/MixModelViz documentation built on May 29, 2019, 8:55 a.m.