GraphicalParameters-class: Default graphical parameters for plotting a MixtureSummary...

In rscharpf/MixModelViz: Plot mixture models with applications to copy number or batch effects

Description

Default parameters for color and fill scales, fixed aesthetic for histogram and line plots. Set any value to NULL to remove a parameter from the plotting function call.

Slots

fill.palette

A vector of colors used for ggplot's fill aesthetic. Values may be any accepted value (including character or numeric) for 'scale_fill_manual(value=)'. Set to NULL to remove the 'scale_fill_manual' call from the 'plot_summary' output. The vector may optionally be named. Default value is a named vector for values 1:5.

color.palette

A vector of colors used for ggplot's color aesthetic. Values may be any accepted value (including character or numeric) for 'scale_color_manual(value=)'. Set to NULL to remove the 'scale_color_manual' call from the 'plot_summary' output. The vector may optionally be named. Default value is a named vector for values c("marginal", 1, 2, 3, 4, 5).

histogram.alpha

Numeric vector of length 1 or the number of observed data points. Values should be acceptable by scales::alpha(), that is, in the range [0,1]. Set to null to remove the alpha argument from the 'geom_histogram' call. Default value is 0.5

histogram.linetype

Vector of length 1 or the number of observed data points. Value type is not checked, but should be an integer, a name, or a string. See help(ggplot2::aes_linetype_size_shape) for more details. Set to null to remove the linetype argument from the 'geom_histogram' call. Default value is 0 (blank).

histogram.size

Numeric vector of length 1 or the number of observed data points. Set to null to remove the alpha argument from the 'geom_histogram' call. Default value is 0.

line.alpha

Numeric vector of length 1 or the number of points representing the theoretical model. Values should be acceptable by scales::alpha(), that is, in the range [0,1]. Set to null to remove the alpha argument from the 'geom_line' call. Default value is 1.

line.linetype

Vector of length 1 or the number of points representing the theoretical model. Value type is not checked, but should be an integer, a name, or a string. See help(ggplot2::aes_linetype_size_shape) for more details. Set to null to remove the linetype argument from the 'geom_line' call. Default value is 1 (solid).

line.size

Numeric vector of length 1 or the number of points representing the theoretical model. Set to null to remove the alpha argument from the 'geom_line' call. Default value is 2.

rscharpf/MixModelViz documentation built on May 29, 2019, 8:55 a.m.