admix: Constructor for admix object
In sa-lee/starmie: Population Structure Model Inference and Visualisation
Description
Constructor for admix object
Usage
1
admix()
Value
an admix object which is a list with 6 elements:
K: number of clusters estimated by ADMIXTURE
nsamples: number of samples used
nmarkers: number of markers used
Q_df: a data.frame of cluster membership probabilities
P_df: a data.frame of estimated marker frequencies in each inferred population
Q_bias_df: a data.frame of bias estimates in cluster membership probabilities
Q_se_df: a data.frame of standard error estimates in cluster membership probabilities
fst_matrix: a symmetric matrix of F_st values between inferred clusters
log_info: a data.frame containing the K, CVerror and logLik of the last model.
sa-lee/starmie documentation built on May 28, 2019, 11 a.m.
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Description
Constructor for admix object
Usage
1 | admix()
|
Value
an admix object which is a list with 6 elements: K: number of clusters estimated by ADMIXTURE
nsamples: number of samples used
nmarkers: number of markers used
Q_df: a data.frame of cluster membership probabilities
P_df: a data.frame of estimated marker frequencies in each inferred population
Q_bias_df: a data.frame of bias estimates in cluster membership probabilities
Q_se_df: a data.frame of standard error estimates in cluster membership probabilities
fst_matrix: a symmetric matrix of F_st values between inferred clusters
log_info: a data.frame containing the K, CVerror and logLik of the last model.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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