struct: Constructor for struct object

In sa-lee/starmie: Population Structure Model Inference and Visualisation

Description

struct object for storing structure run information

Usage

struct()

Details

The struct object is a list with 11 elements:

K: number of clusters estimated by Structure

run_params: the run parameters given to the Structure program

mem_df: assigned cluster membership proportions

allele_freqs: Estimated net nucleotide distances between cluster

avg_dist_df: Average distance between individuals

fit_stats_df: Model fit statistics

fst_df: Fst values

ancest_df: Inferred ancestry of individuals

clust_allele_list: Cluster allele frequencies

burn_df: Burn in MCMC iteration output

nonburn_df: Main MCMC iteration output

Value

a struct object

See Also

loadStructure for reading in STRUCTURE out_f files.

structList for manipulating multiple struct objects

sa-lee/starmie documentation built on May 28, 2019, 11 a.m.