plotFineStructDendro: Plot dendrogram from output of fineStructure

In sa-lee/starmie: Population Structure Model Inference and Visualisation

Description

Plot dendrogram from output of fineStructure

Usage

plotFineStructDendro(x, cex = 0.7, ...)

Arguments

x	a fineStruct or ape::phylo object
cex	(default=0.7) number indicating the amount by which plotting text and symbols should be scaled relative to the default.
...	Additional arguments to be passed to ape::plot.phylo

Examples

# fineStruct example
chunkfile <- system.file("extdata/fine_structure_files", "EastAsiaSimple.EMlinked.chunkcounts.out", package = "starmie")
treefile <- system.file("extdata/fine_structure_files", "EastAsiaSimple.EMlinked.tree.xml", package = "starmie")
mcmcfile <- system.file("extdata/fine_structure_files", "EastAsiaSimple.EMlinked.mcmc.xml", package = "starmie")
fineData <- loadFineStructure(chunkfile, treefile, mcmcfile)
plotFineStructDendro(fineData)

sa-lee/starmie documentation built on May 28, 2019, 11 a.m.