Description Usage Arguments Examples
View source: R/plotFineStructDendro.R
Plot dendrogram from output of fineStructure
1 | plotFineStructDendro(x, cex = 0.7, ...)
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x |
a |
cex |
(default=0.7) number indicating the amount by which plotting text and symbols should be scaled relative to the default. |
... |
Additional arguments to be passed to ape::plot.phylo |
1 2 3 4 5 6 | # fineStruct example
chunkfile <- system.file("extdata/fine_structure_files", "EastAsiaSimple.EMlinked.chunkcounts.out", package = "starmie")
treefile <- system.file("extdata/fine_structure_files", "EastAsiaSimple.EMlinked.tree.xml", package = "starmie")
mcmcfile <- system.file("extdata/fine_structure_files", "EastAsiaSimple.EMlinked.mcmc.xml", package = "starmie")
fineData <- loadFineStructure(chunkfile, treefile, mcmcfile)
plotFineStructDendro(fineData)
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