API for sa-lee/starmie
Population Structure Model Inference and Visualisation

Global functions
G Source code Source code Source code
J Source code
JSD Source code
J_largeK Source code
J_perm Source code
KLD Source code
addNoise Source code
admix Man page Source code
admixList Man page Source code
averagePairWiseSimilarityH Man page Source code
averageQ Man page Source code
bestK Man page Source code
bestK.admixList Source code
bestK.structList Source code
bestK_evanno Source code
bestK_structure Source code
calcThreshold Source code
clumpak Man page Source code
clumpp Man page Source code
combineLogs Source code
exampleAdmixture Man page Source code
exampleStructure Man page Source code
fineStruct Man page Source code
getClusterAlleleFreqMat Man page Source code
getClusterAlleleFreqMat.admix Source code
getClusterAlleleFreqMat.struct Source code
getCompleteAlleleFreqMat Man page Source code
getCompleteAlleleFreqMat.struct Source code
getD Man page Source code
getFitStats Man page Source code
getK Man page Source code
getK.admix Source code
getK.struct Source code
getMCMC Man page Source code
getPosterior Man page Source code
getQ Man page Source code
getQ.admix Source code
getQ.struct Source code
getStephens Man page Source code
get_best_permutation Source code
is.sequential Source code
iterativeGreedy Source code
largeKGreedy Source code
loadAdmixture Man page Source code
loadFineStructure Man page Source code
loadStructure Man page Source code
logit Source code
memoryGreedy Source code
mydplot Source code
plotBar Man page Source code
plotBar.admix Source code
plotBar.matrix Source code
plotBar.struct Source code
plotFineStructDendro Man page Source code
plotFineStructDendro.fineStruct Source code
plotFineStructDendro.phylo Source code
plotMCMC Man page Source code
plotMCMC.struct Source code
plotMCMC.structList Source code
plotMDS Man page Source code
plotMDS.admix Source code
plotMDS.matrix Source code
plotMDS.struct Source code
plotMultiK Man page Source code
plotMultiK.admixList Source code
plotMultiK.list Source code
plotMultiK.structList Source code
plotMultiQ Source code
plotPWCoancestry Man page Source code
plotPWCoincidence Man page Source code
plotQ Source code
plotTreeBar Man page Source code
plotTreeBar.admix Source code
plotTreeBar.matrix Source code
plotTreeBar.struct Source code
plotTreeQ Source code
print.admix Source code
print.admixList Source code
print.fineStruct Source code
print.struct Source code
print.structList Source code
read_logfiles Source code
runStructure Man page Source code
simulateQ Man page Source code
struct Man page Source code
structList Man page Source code
sa-lee/starmie documentation built on May 25, 2017, 10:21 p.m.