runStructure: Run STRUCTURE in current path
In sa-lee/starmie: Population Structure Model Inference and Visualisation

Description Usage Arguments Note Examples

Run STRUCTURE in current path

1 2	runStructure(path_to_structure, input_file, main_params, extra_params, out_prefix, n_K, n_replicates, n_cores)

`path_to_structure`	path to structure binary executable (ie. /usr/bin/structure)
`input_file`	file name of input data
`main_params`	file name of mainparams file for STRUCTURE
`extra_params`	file name of extraparams file for STRUCTURE
`out_prefix`	prefix path/name for logging
`n_K`	number of assumed populations to try
`n_replicates`	number of replicates
`n_cores`	number of cores

Set RANDOMIZE = 0 in main params file to avoid using same seed. Haven't tested on Windows.

## Not run: 
input_file <- system.file("inst/extdata/microsat_testfiles", "locprior.str", package = "starmie")
main_params <- system.file("inst/extdata/microsat_testfiles", "mainparams", package = "starmie")
extra_params <-  system.file("inst/extdata/microsat_testfiles", "extraparams", package = "starmie")
runStructure("structure", input_file, main_params, extra_params, "test", 5, 2, 2)

## End(Not run)