createAndRunILP: Creating and running the ILP problem.

View source: R/createAndRunILP.R

createAndRunILPR Documentation

Creating and running the ILP problem.

Description

This function takes as an input the cno inputs (model + data) together with CPLEX parameters and then solves the ILP problem.

Usage

createAndRunILP(model = model, 
                            midas = midas, 
                            cnolist = cnolist, 
                            accountForModelSize = accountForModelSize, 
                            sizeFac = sizeFac, 
                            source_path = source_path, 
                            mipGap = mipGap, 
                            relGap = relGap, 
                            timelimit = timelimit,
                            cplexPath = cplexPath, 
                            method = method, 
                            numSolutions = numSolutions, 
                            limitPop = limitPop, 
                            poolIntensity = poolIntensity, 
                            poolReplace = poolReplace)

Arguments

model

the model

midas

the midas table

cnolist

the cnolist object

accountForModelSize

the verbose parameter whether to account for model size

sizeFac

the size penalty factor

source_path

the source path

mipGap

the mipgap

relGap

the relGap

timelimit

the timelimit

cplexPath

the cplex solver path

method

the optimization method (quadratic/linear)

numSolutions

the number of desired solutions

limitPop

the limitPop

poolIntensity

the poolIntensity

poolReplace

the poolReplace

Author(s)

E Gjerga, H Koch


saezlab/CellNOptR documentation built on April 16, 2024, 5:21 a.m.