createAndRunILP: Creating and running the ILP problem.

In saezlab/CellNOptR: Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

Creating and running the ILP problem.

Description

This function takes as an input the cno inputs (model + data) together with CPLEX parameters and then solves the ILP problem.

Usage

createAndRunILP(model = model, 
                            midas = midas, 
                            cnolist = cnolist, 
                            accountForModelSize = accountForModelSize, 
                            sizeFac = sizeFac, 
                            source_path = source_path, 
                            mipGap = mipGap, 
                            relGap = relGap, 
                            timelimit = timelimit,
                            cplexPath = cplexPath, 
                            method = method, 
                            numSolutions = numSolutions, 
                            limitPop = limitPop, 
                            poolIntensity = poolIntensity, 
                            poolReplace = poolReplace)

Arguments

model	the model
midas	the midas table
cnolist	the cnolist object
accountForModelSize	the verbose parameter whether to account for model size
sizeFac	the size penalty factor
source_path	the source path
mipGap	the mipgap
relGap	the relGap
timelimit	the timelimit
cplexPath	the cplex solver path
method	the optimization method (quadratic/linear)
numSolutions	the number of desired solutions
limitPop	the limitPop
poolIntensity	the poolIntensity
poolReplace	the poolReplace

Author(s)

E Gjerga, H Koch

saezlab/CellNOptR documentation built on April 16, 2024, 5:21 a.m.