defaultParameters: Create a list of default parameters

In saezlab/CellNOptR: Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

Create a list of default parameters

Description

This function provides a list of default parameters including the Genetic Algorithm parameters.

Usage

defaultParameters(data=NA, model=NA)

Arguments

data	a CNOlist structure, as created by makeCNOlist
model	a model structure, as created by readSIF, normally pre-processed but that is not a requirement of this function

Details

The list contains the Genetic Algorithm parameter, a verbose option and can be used to store the Data and Model.

Value

params

a list with the fields: data, model, verbose and all default parameters of gaBinaryT1

Author(s)

T. Cokelaer

Examples

data(ToyModel, package="CellNOptR")
data(CNOlistToy, package="CellNOptR")
params = defaultParameters(CNOlistToy, ToyModel)

saezlab/CellNOptR documentation built on April 16, 2024, 5:21 a.m.