liana_heatmap: Communication by cell type Heatmap

In saezlab/liana: LIANA: a LIgand-receptor ANalysis frAmework

Communication by cell type Heatmap

Description

Communication by cell type Heatmap

Usage

liana_heatmap(
  mat,
  font_size = 12,
  grid_text = FALSE,
  name = "Frequency",
  pallette = c("white", "violetred2"),
  row_title = "Sender (Cell types)",
  column_title = "Receiver (Cell types)",
  ...
)

Arguments

mat	Diagonal celltype-celltype matrix to be plotted. In theory, any metric deemed meaningful between cell pairs can be plotted.
font_size	base font_size - other fontsizes are relative to this one
grid_text	logical whether to display grid text or not
name	name of the heatmap. By default the heatmap name is used as the title of the heatmap legend.
row_title	Row tittle
column_title	Column tittle
...	parameters passed to 'ComplexHeatmap::Heatmap'

Details

Heatmap function inspired by CellPhoneDBv3 and CellChat's designs on communication heatmaps.

saezlab/liana documentation built on Aug. 10, 2024, 8:14 a.m.