mean_permute: Function to calculate mean LR expression from shuffled...
In saezlab/liana: LIANA: a LIgand-receptor ANalysis frAmework
mean_permute R Documentation
Function to calculate mean LR expression from shuffled cluster label matrices
as done in CellPhoneDB
Description
Function to calculate mean LR expression from shuffled cluster label matrices
as done in CellPhoneDB
Usage
mean_permute(col_labels, sce, pb, assay.type)
Arguments
col_labels
cluster labels
sce
single cell experiment object
pb
progress bar object
assay.type
assay type (counts, logcounts, etc)
Value
Returns a list of means per gene calculated with reshuffled
cluster/cell identity labels
saezlab/liana documentation built on Nov. 8, 2023, 11:53 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| mean_permute | R Documentation |
Function to calculate mean LR expression from shuffled cluster label matrices as done in CellPhoneDB
Description
Function to calculate mean LR expression from shuffled cluster label matrices as done in CellPhoneDB
Usage
mean_permute(col_labels, sce, pb, assay.type)
Arguments
col_labels |
cluster labels |
sce |
single cell experiment object |
pb |
progress bar object |
assay.type |
assay type (counts, logcounts, etc) |
Value
Returns a list of means per gene calculated with reshuffled cluster/cell identity labels
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.