select_resource: Helper Function to Handle resource choices

In saezlab/liana: LIANA: a LIgand-receptor ANalysis frAmework

Helper Function to Handle resource choices

Description

Helper Function to Handle resource choices

Usage

select_resource(resource)

Arguments

resource

names of the resources. Passing 'all' will return all human resources (i.e. all resources, except MouseConsensus)

Details

This function simply reads omni_resources.rds and returns the resources. Any of the resources can also be obtained via the same file. or the 'compile_ligrec' function, which querries and assmelbes the resources via 'OmniPathR'.

'Default' - The Default (inbuilt) resource for each of the methods; if using the 'call_*' functions, the default resource is used by passing *NULL* to the resource parameter. 'Reshuffled' - a reshuffled (randomized control) version of ConnectomeDB

saezlab/liana documentation built on Nov. 8, 2023, 11:53 a.m.