Iterate_PC_Loading_Plots: Iterate PC Loading Plots

In samuel-marsh/scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing

Iterate PC Loading Plots

Description

Plot PC Heatmaps and Dim Loadings for exploratory analysis

Usage

Iterate_PC_Loading_Plots(
  seurat_object,
  dims_plot = NULL,
  file_path = NULL,
  name_prefix = NULL,
  file_name = "PC_Loading_Plots",
  return_plots = FALSE
)

Arguments

seurat_object	Seurat object name.
dims_plot	number of PCs to plot (integer). Default is all dims present in PCA.
file_path	directory file path to save file.
name_prefix	prefix for file name (optional).
file_name	suffix for file name. Default is "PC_Loading_Plots".
return_plots	Whether to return the plot list (Default is FALSE). Must assign to environment to save plot list.

Value

A list of plots outputted as pdf

See Also

PCHeatmap and VizDimLoadings

Examples

## Not run: 
Iterate_PC_Loading_Plots(seurat_object = seurat, dims_plot = 25, file_path = "plots/")

## End(Not run)

samuel-marsh/scCustomize documentation built on Dec. 20, 2024, 7:41 a.m.