Median_Stats: Median Statistics

In samuel-marsh/scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing

Median Statistics

Description

Get quick values for median Genes, UMIs, %mito per cell grouped by meta.data variable.

Usage

Median_Stats(
  seurat_object,
  group_by_var = "orig.ident",
  default_var = TRUE,
  median_var = NULL
)

Arguments

seurat_object	Seurat object name.
group_by_var	Column in meta.data slot to group results by (default = "orig.ident").
default_var	logical. Whether to include the default meta.data variables of: "nCount_RNA", "nFeature_RNA", "percent_mito", "percent_ribo", "percent_mito_ribo", and "log10GenesPerUMI" in addition to variables supplied to median_var.
median_var	Column(s) in ⁠@meta.data⁠ to calculate medians for in addition to defaults. Must be of class() integer or numeric.

Value

A data.frame.

Examples

## Not run: 
med_stats <- Median_Stats(seurat_object - obj, group_by_var = "orig.ident")

## End(Not run)

samuel-marsh/scCustomize documentation built on Dec. 20, 2024, 7:41 a.m.