Plot_Cells_per_Sample: Plot Number of Cells/Nuclei per Sample

In samuel-marsh/scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing

Plot Number of Cells/Nuclei per Sample

Description

Plot of total cell or nuclei number per sample grouped by another meta data variable.

Usage

Plot_Cells_per_Sample(
  seurat_object,
  sample_col = "orig.ident",
  group_by = NULL,
  colors_use = NULL,
  dot_size = 1,
  plot_title = "Cells/Nuclei per Sample",
  y_axis_label = "Number of Cells",
  x_axis_label = NULL,
  legend_title = NULL,
  x_lab_rotate = TRUE,
  color_seed = 123
)

Arguments

seurat_object	Seurat object name.
sample_col	Specify which column in meta.data specifies sample ID (i.e. orig.ident).
group_by	Column in meta.data slot to group results by (i.e. "Treatment").
colors_use	List of colors or color palette to use.
dot_size	size of the dots plotted if group_by is not NULL. Default is 1.
plot_title	Plot title.
y_axis_label	Label for y axis.
x_axis_label	Label for x axis.
legend_title	Label for plot legend.
x_lab_rotate	logical. Whether to rotate the axes labels on the x-axis. Default is FALSE.
color_seed	random seed for the "varibow" palette shuffle if colors_use = NULL and number of groups plotted is greater than 36. Default = 123.

Value

A ggplot object

Examples

## Not run: 
Plot_Cells_per_Sample(seurat_object = obj, sample_col = "orig.ident", group_by = "Treatment")

## End(Not run)

samuel-marsh/scCustomize documentation built on Dec. 20, 2024, 7:41 a.m.