Setup_scRNAseq_Project: Setup project directory structure

In samuel-marsh/scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing

Setup project directory structure

Description

Create reproducible project directory organization when initiating a new analysis.

Usage

Setup_scRNAseq_Project(
  custom_dir_file = NULL,
  cluster_annotation_path = NULL,
  cluster_annotation_file_name = "cluster_annotation.csv"
)

Arguments

custom_dir_file	file to file containing desired directory structure. Default is NULL and will provide generic built-in directory structure.
cluster_annotation_path	path to place cluster annotation file using Create_Cluster_Annotation_File.
cluster_annotation_file_name	name to use for annotation file if created (optional).

Value

no return value. Creates system folders.

Examples

## Not run: 
# If using built-in directory structure.
Setup_scRNAseq_Project()

## End(Not run)

samuel-marsh/scCustomize documentation built on Dec. 20, 2024, 7:41 a.m.