Store_Palette_Seurat: Store color palette in Seurat object

In samuel-marsh/scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing

Store color palette in Seurat object

Description

Wrapper function around Store_Misc_Info_Seurat to store color palettes.

Usage

Store_Palette_Seurat(
  seurat_object,
  palette,
  palette_name,
  list_as_list = FALSE,
  overwrite = FALSE,
  verbose = TRUE
)

Arguments

seurat_object	object name.
palette	vector or list of vectors containing color palettes to store. If list of palettes see list_as_list parameter for control over data storage.
palette_name	name to give the palette(s) in ⁠@misc⁠ slot. Must be of equal length to the number of data items being stored.
list_as_list	logical. If data_to_store is a list, this dictates whether to store in ⁠@misc⁠ slot as list (TRUE) or whether to store each entry in the list separately (FALSE). Default is FALSE.
overwrite	Logical. Whether to overwrite existing items with the same name. Default is FALSE, meaning that function will abort if item with data_name is present in misc slot.
verbose	logical, whether to print messages when running function, default is TRUE.

Value

Seurat Object with new entries in the ⁠@misc⁠ slot.

Examples

library(Seurat)
clu_pal <- c("red", "green", "blue")

pbmc_small <- Store_Misc_Info_Seurat(seurat_object = pbmc_small, data_to_store = clu_pal,
data_name = "rd1_colors")

samuel-marsh/scCustomize documentation built on Dec. 20, 2024, 7:41 a.m.