scCustomize_Palette: Color Palette Selection for scCustomize

In samuel-marsh/scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing

Color Palette Selection for scCustomize

Description

Function to return package default discrete palettes depending on number of groups plotted.

Usage

scCustomize_Palette(
  num_groups,
  ggplot_default_colors = FALSE,
  color_seed = 123
)

Arguments

num_groups	number of groups to be plotted. If ggplot_default_colors = FALSE then by default: If number of levels plotted equal to 2 then colors will be NavyAndOrange(). If number of levels plotted greater than 2 but less than or equal to 36 it will use "polychrome" from DiscretePalette_scCustomize(). If greater than 36 will use "varibow" with shuffle = TRUE from DiscretePalette_scCustomize.
ggplot_default_colors	logical. Whether to use default ggplot hue palette or not.
color_seed	random seed to use for shuffling the "varibow" palette.

Value

vector of colors to use for plotting.

Examples

cols <- scCustomize_Palette(num_groups = 24, ggplot_default_colors = FALSE)
PalettePlot(pal= cols)

samuel-marsh/scCustomize documentation built on Dec. 20, 2024, 7:41 a.m.