API for sandraTL/PADIGM
Pathway Analysis with distance between genes and metablites
| Global functions | |
|---|---|
| Graph-class | Man page |
| RUnitTest | Source code |
| allShortestPaths,Graph-method | Man page |
| assoDataXlsx | Source code |
| associatedShortestPaths,Graph-method | Man page |
| barplotFunctionGeneToAllMetabo | Source code |
| barplot_adjustMaximalDistance | Man page Source code |
| c2f | Source code |
| changeDFassoToRigthDistances | Source code |
| correctKeggIdString | Source code |
| correctReactionString | Source code |
| createGraphFromPathway | Man page Source code |
| createIGraph,GraphElements-method | Man page |
| distanceGeneToAllMetabolite | Man page Source code |
| finalReactionEdgeDF | Man page Source code |
| fromAssosDFEntryToIGraphIdDF,Graph-method | Man page |
| genesInKEGGandInMap | Source code |
| getAllGeneInMap | Source code |
| getAllHumanGeneInKEGG | Source code |
| getAllMetaboliteInKEGG | Source code |
| getAllMetaboliteInMap | Source code |
| getAssociatedMetaboByGene | Source code |
| getAssociationForHeatmap | Source code |
| getCellsToHighligh | Source code |
| getCommonNames | Source code |
| getCompoundNodeKgmlId | Man page Source code |
| getDataFrameOfDuplicateCompounds | Man page Source code |
| getDistanceAll | Man page Source code |
| getDistanceAsso | Man page Source code |
| getFinalAssoDfSd,Graph-method | Man page |
| getFinalDFSHortestDistance,Graph-method | Man page |
| getHeadTailKgmlIdOfEdge | Man page Source code |
| getIdGeneInGraph,Graph-method | Man page |
| getIdMetabolitesInGraph,Graph-method | Man page |
| getKGMLRootNode | Source code |
| getListEdgeFromGeneKGML | Man page Source code |
| getListNodeFromKGML | Man page Source code |
| getListReactionFromKGML | Man page Source code |
| getPathwayKGML | Man page Source code |
| heatmapFunction | Man page Source code |
| hello | Man page |
| histogramFunction | Source code |
| igraph-class | Man page |
| isFileInDirectory | Source code |
| merge2DFWithSmallestValue | Source code |
| mergeRowsWithSmallestValueByKEGGId | Man page Source code |
| mergeVectorsLowerValues | Man page Source code |
| metabolitesInKEGGandInMap | Source code |
| multiplot | Source code |
| numberOfMetabolites | Source code |
| numberOfReactions | Source code |
| permutationFunction | Man page Source code |
| removeDuplicatedColumnDF | Source code |
| removeNotInGraph | Source code |
| removeRowsDistanceAll | Man page Source code |
| removeRowsDistanceAsso | Source code |
| test.c2f | Source code |
| toCompoundAdressfile | Source code |
| toStringAdressfile | Source code |
| toStringDestfile | Source code |
| toStringPathFile | Source code |
| unlistEdgeReactionCol | Man page Source code |
