sanger-pathogens/deago: DEAGO: RNASeq differential expression analysis and GO term enrichment reporter

Generation of user-friendly HTML reports from differential expression analyis (DESeq2) and GO term enrichment (topGO) of count data using knitr. User provides count data and 'deago' will run the analysis and generate a HTML summary report containing QC plots, DE genes and top 30 GO terms.

Getting started

Package details

MaintainerVictoria Offord <vo1@sanger.ac.uk>
LicenseGPL-3 | file LICENSE
Version1.1.4
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("sanger-pathogens/deago")
sanger-pathogens/deago documentation built on May 28, 2019, 8:42 a.m.