labelDEgenes: Label DE genes
In sanger-pathogens/deago: DEAGO: RNASeq differential expression analysis and GO term enrichment reporter
Description
Helper function to label DE genes from a DESeqResults dataframe
with a given Log2FoldChange and padj cutoff. Adds a label column (de) where
values are non-significant (0), up-regulated (1) or down-regulated (2).
Usage
1
labelDEgenes(contrast, geneSymbols = NULL, lfc = 2, alpha = 0.05)
Arguments
contrast
A DESeqResults object
geneSymbols
details
lfc
Log2FoldChange threshold value
alpha
FDR threshold
sanger-pathogens/deago documentation built on May 28, 2019, 8:42 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Helper function to label DE genes from a DESeqResults dataframe with a given Log2FoldChange and padj cutoff. Adds a label column (de) where values are non-significant (0), up-regulated (1) or down-regulated (2).
Usage
1 | labelDEgenes(contrast, geneSymbols = NULL, lfc = 2, alpha = 0.05)
|
Arguments
contrast |
A DESeqResults object |
geneSymbols |
details |
lfc |
Log2FoldChange threshold value |
alpha |
FDR threshold |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.