API for sanger-pathogens/deago
DEAGO: RNASeq differential expression analysis and GO term enrichment reporter
| Global functions | |
|---|---|
| addAnnotationsToDataSet | Man page |
| annotateDataset | Man page |
| buildConfig | Man page |
| constructDESeqDataset | Man page |
| contrastSummary | Man page |
| filterGeneIdentifiers | Man page |
| formatReadCounts | Man page |
| getContrasts | Man page |
| getGOidentifiers | Man page |
| getGOlist | Man page |
| getGOsymbols | Man page |
| getGeneSymbols | Man page |
| getPrincipalComponents | Man page |
| getTopGenes | Man page |
| getVennCounts | Man page |
| importAnnotation | Man page |
| importConfig | Man page |
| importTargets | Man page |
| labelDEgenes | Man page |
| makeResultDir | Man page |
| pcaPlot | Man page |
| pcaScreePlot | Man page |
| pcaSummary | Man page |
| plotContrastMA | Man page |
| plotCooks | Man page |
| plotDensity | Man page |
| plotDispersionEstimates | Man page |
| plotNullCounts | Man page |
| plotReadCounts | Man page |
| plotSampleDistances | Man page |
| plotToFile | Man page |
| plotVenn | Man page |
| plotVolcano | Man page |
| prepareColData | Man page |
| prepareContrast | Man page |
| prepareContrastTable | Man page |
| prepareGOdata | Man page |
| prepareGOtable | Man page |
| readCountData | Man page |
| roundToBase | Man page |
| roundToFactorOfTen | Man page |
| runDESeqAnalysis | Man page |
| runGOanalysis | Man page |
| topGOanalysis | Man page |
| validateConfig | Man page |
| validateTargets | Man page |
| writeConfig | Man page |
| writeContrasts | Man page |
| writeGOtables | Man page |
