clusterGenesetsByGenes: Cluster a set of genesets by gene membership

In sansomlab/gsfisher: Geneset Fisher

Cluster a set of genesets by gene membership

Description

Cluster a set of genesets by gene membership

Usage

clusterGenesetsByGenes(
  results_table,
  genes_col = "gene_names",
  dist_method = "manhattan",
  hclust_method = "ward.D2",
  id_col = "geneset_id"
)

Arguments

results_table	The table of geneset results
genes_col	The name of the column containing comma-separated genenames
dist_method	The name of the distance method to pass to "dist"
hclust_method	The name of the clustering method to pass to "hclust"
id_col	The column containing a unique identifier for the geneset

sansomlab/gsfisher documentation built on July 7, 2022, 4:21 a.m.