mapENTREZhuman2mouse: Translate ENTREZ gene sets from human to mouse

In sansomlab/gsfisher: Geneset Fisher

Translate ENTREZ gene sets from human to mouse

Description

Uses ENSEMBL biomaRt for converting human MSigDB gene sets to mouse.

Usage

mapENTREZhuman2mouse(GMT, ensembl_version = NULL)

Arguments

GMT	A named list of gene sets (e.g., from readGMT).
ensembl_version	Version of the ensembl annotation to use, passed to biomaRt::useEnsembl. The default NULL uses the current annotation release.

Author(s)

Steve Sansom

See Also

readGMT useEnsembl

Examples

gmtFile <- system.file(package = "gsfisher", "extdata", "kegg_hs.gmt")
ann_gmt <- readGMT(gmtFile)
## Not run: 
mapENTREZhuman2mouse(ann_gmt, ensembl_version=NULL)

## End(Not run)

sansomlab/gsfisher documentation built on July 7, 2022, 4:21 a.m.