fisherTest: Perform a single Fisher test for gene set enrichement

In sansomlab/gsfisher: Geneset Fisher

Perform a single Fisher test for gene set enrichement

Description

Perform a single Fisher test for gene set enrichement

Usage

fisherTest(n, genesets, foreground_ids, background_ids, symbols)

Arguments

n	A numeric scalar indicating the index of the gene set to test.
genesets	A named list of gene sets.
foreground_ids	A list of ENTREZ ids of interest (e.g. significantly differentially expressed genes).
background_ids	A list of background ENTREZ ids. against which enrichment will be tested (i.e., the gene universe).
symbols	A named vector comprising entrez_id to gene_symbol mappings.

See Also

runFisherTests.

Examples

# TODO
## Not run: 
# TODO

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sansomlab/gsfisher documentation built on July 7, 2022, 4:21 a.m.