runFisherTests: Run a set of Fisher tests for gene set enrichement

In sansomlab/gsfisher: Geneset Fisher

Run a set of Fisher tests for gene set enrichement

Description

Run a set of Fisher tests for gene set enrichement

Usage

runFisherTests(named_geneset_list, foreground_ids, background_ids, SYMBOL)

Arguments

named_geneset_list	List of named gene sets.
foreground_ids	A list of ENTREZ ids of interest (e.g. significantly differentially expressed genes)
background_ids	A list of background ENTREZ ids. against which enrichment will be tested (i.e., the gene universe)
annotations	A data.frame with at least columns "entrez_id" and "gene_name" (see fetchAnnotation).

Author(s)

Steve Sansom

See Also

readGMT, fisherTest.

Examples

# TODO
## Not run: 
# TODO

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sansomlab/gsfisher documentation built on July 7, 2022, 4:21 a.m.